Introduction Keras can now be called directly in tensorflow, because of the existence of the high-level API of keras, the
Introduction The bedgraph graph can be displayed using the plotBedgraph function of the Sushi package. However, we sometimes need to
Introduction The plotGenes of the Sushi package can plot gene structures, such as the visualization of several transcriptome structures. Code
Introduction The Manhattan chart can display the values of regions on multiple chromosomes. You can use the plotManhattan of the
Introduction The bed format is a common format for describing genomic regions. The area can be visualized through the plotBed
Introduction The BEDPE format can concisely describe disjoint genome features, such as structural variations or paired end sequence alignments. The
Introduction The HiC interaction matrix is the interaction score between two positions on the genome. The HiC interaction graph can
Introduction The display of bedgraph can use the plotBedgraph function of Sushi package Code explanation Input bedGraph formatdata frame head(Sushi_DNaseI.bedgraph)
Introduction Sushi package can draw a variety of common genome formats, including bed, bedpe, bedgraph, Hic matrix, Manhattan map, gene
Introduction When ggplot is making box plots or dot plots, it can actually check and add p-values, just use the
